PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS28540 (418 amino acids)

SeqID: RR42_RS28540 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599909: probable aminotransferase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS28540
MSASAGKRRFARIDRLPPYVFNITAELKMAARRRGEDIIDMSMGNPDGATPAHIVAKLTE
AAQRPDTHGYSASKGIPRLRRAISHWYRERYDVEIDPDTEAIVTIGSKEGLAHLMLATLD
RGDTVLVPDPSYPIHIYGAVIAGADIRSVPLVPGVDFFAEMERAIRGSYPKPKMIVLGFP
SNPTAQCVELDFFERVIALARKHDIFVVHDLAYADIVFDGWKAPSIMQVEGAKDIAVEFF
TLSKSYNMAGWRIGFMVGNPDLVAALTRMKSYHDYGTFTPLQVAAIAALEGDQQCVKEIA
AHYQTRRDVLARGLIESGWPVEIPKASMYIWARIPEPYRALGSLEFSKQLLAKAKVCVSP
GIGFGDYGDEYVRFALIENEARIRQAVRGIKAMFRADGLVKVPVDEHQPSGHAPKPKD

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory