PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS29410 (540 amino acids)

SeqID: RR42_RS29410 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598084: geranyl-CoA carboxylase, beta-subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS29410
MANIESRLSAGSEAFQANRAGMLALLERIRAFEQRAASLSAASRERFEKRGQLLPRDRLA
LLLDPGAPFIELSSLAGLGLDNPDLDKSVPGGGLIAGIGFVSGLRCMISASDSGINAGAL
QPKGLDKQLRVQEIALENKLPYVQLVESAGANLMTYKVEDFVRGGNLFRNLALLSAAGLP
VVTVTHGSSTAGGAYQTGLSDYIIMVRGRSRAFLAGPPLLMAATGEVATEEELGGAVMHT
SVSGLGDYLAEDDRDALRIAREILGKIDWHRDQPAAAPRSYKPPRFDAEELLGVMPMDHK
RPVDMKEVIARIADDSDFLEFGENYGGATVCGHVKIEGWPLGIITNNGPIDPAGATKATH
FIQACCQSRTPILYLNNTTGFMVGRSHEEAGIIKHGSKMIQAVSNATVPQITIYCGASFG
AGNYGMCGRGFHPRFCFSWPNAKTAVMGGEQAARTMAIVTEAAMKRKGGQADADQLEALQ
KGIVERFDRQMSVFVTSAHVLDDGVIDPRNTRAVLANVLAICREGDARTPQAMQFGVARP