PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS29420 (666 amino acids)

SeqID: RR42_RS29420 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598087: geranyl-CoA carboxylase, alpha-subunit (biotin-containing)[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS29420
MKQPTPFQKILIANRGEIALRVMRSATALGYRTVAVYSSADAGARHVEEAGQAVYIGQAQ
PAQSYLRIDAIIEAARRSGADAVHPGYGFLAENAAFARACREAGLVFIGPSAESIVAMGN
KAGAKRLMMAADVPCIPGYQGEDQDEARLCAEAERIGFPVMIKATAGGGGRGMRLVPHAR
AFPELLRSARSEAQGAFGDPEVILERAVVEPRHIEIQILADRYGNAIHLGERDCSVQRRH
QKLIEEAPSPAVSAELRARMGATAVAAVKAIGYEGAGTLEFLLDRDGNYYFMEMNTRLQV
EHPVTEAITGLDLVALQLRIAAGEPLPLRQEDVRFSGHAIEVRLCAEDADQGFMPQSGEI
ALWQAPPALRVEHALGSGAAIPPYYDSMIAKLISYGGTRDEARRKLSQGLEDLVALGVTT
NQVFLGRCLAHPAFAAGEATTAFIGQHQDALLQPDAALRQRAAALAALLLYETSPERQPG
APAASLAPTLPIGLRYRVNGAEHQASLAYGAGNRFAVAMGESRFAFETIALGAHSVRFSC
DGLVESATFHRDASTLLLHYQGTPLRIEDHTRAAAARAGEAAGDGKLRASMNGRVVNVMV
AAGDQVEAGQPMVTLEAMKMEHIHVAPAAGRVGAVHVQVGDQAAAMRVIAEIEFEAPPAE
PVKAAA