PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS29880 (357 amino acids)

SeqID: RR42_RS29880 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595514: hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS29880
MTTIPTEVSHLIETVLHARKTKTSLNIVGGGTKCFYGEEPSGEPCDVRRLSGICSYEPSE
LVVTARAGTPLEELEAVLAEHNQYLAFEPPRFAKGSTVGGAVAAGLSGPARVGVGSIRDF
VLGATMINGKGELLTFGGQVMKNVAGYDVSRLLAGSMGILGVICEVSLKVLPIHSSRITL
FIERDEAGALSLLNGLTRQALPVNASAWHDGKLFLRLSGAASAVTEARKRLGGTELEPDE
ALSWWDAVRDHRHDFFSQSDAPLWRVSVPAVSQPFLAANQLIEWGGALRWLYTDDPIEDV
REMASSLGGHATLFRDPHHRSGVFTPPSDALFEIHRNLKQAFDPDGIFNVGRLYPGL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory