PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS30240 (544 amino acids)

SeqID: RR42_RS30240 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 7404417: Oligopeptide transport ATP-binding protein oppF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS30240
MERTTVTGTGPVLAVRDLWVTLPAGSDRPLAVRHISFEVAPGRIMCLLGESGSGKSVIAQ
AVMGLLPPTLKPCAGRIELLGENLLEASTRRLRALRGVAMAMVFQEPMTALNPVMTCGAQ
VDEVLAWHTDLRPAERRARILEIFARTRLPEPERIYSAYPHQLSGGQRQRIVIAIAMILR
PALLICDEPTTALDVTTQAEILKLIRELQAESGTAVLFITHDFGVVAEIADDVAVLQLGE
LIEQGPKEAVLRRPQEPYTKMLLGAVPRLRPAGRPEVKAAAPLLKASGLAKTYVTGNWPA
RRGIVQAVQDVALAVHAGETVGIVGESGSGKSTVARCIARLIEPSAGEIWAQGRSMAKAA
KRDISAFRRTVQVVFQDPYRSLNPRQTVGASIVEGPLNFGVPARQAWARAEELMHLVRLN
PDALQRYPSEFSGGQRQRICIARALACDPEVLIADEAVSALDVSVQAQIIALLNDIQQRL
KLGILFITHDLRVASQICDRVIVMRQGRIVEQGSARDIFLSPRQPYTQALLAAAPGQDYE
FGAG