PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS31315 (569 amino acids)

SeqID: RR42_RS31315 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 2499313: NADH-quinone oxidoreductase subunit 1 (NADH dehydrogenase I chain 1) (NDH-1 subunit 1)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS31315
MNQVVIPIAVQDIGKARKRRQPKGRQPDPAALAEVQAALGDAPRRRDLLIEHLHAINDRF
GQLAIPHLVALAQEMGLSMAEVYEVATFYHHFDVVREDGDGVIRPPAAVTVRVCEGIACE
LGGGRDLLARLPALLGSEVKVVAAPCIGRCERAPAALVGQNPVDFASAQTIADTVAARAV
HHAPEAHLGYDDYRAQGGYQLLRAVASGEHDSESLLRTMEDSGLRGLGGAGFPTGRKWRI
VMAEPAPRLMAVNLDEGEPGTFKDRVYLERDPHRFLEGMLIAAAVTQVSAIYIYLRDEYA
GCRAVLGQALRRLQAEPPIPDMPQIQLRRGAGAYICGEESAMIESIEGKRGMPRLRPPYV
AQVGLFGRPTLEHNFETLYWVREILEKGAGWFAAQGRHGRHGLRSFSVSGRVKLPGVHVA
PAGITVSELIEEYCGGMQDGHCFYGYLPGGASGGILPASLGDIPLDFDTLQPYGCFIGSA
AIVVFSEQDSAVAVARNLMHFFKHESCGQCTPCRVGTAKALDVIAQPKWDLAALADLSAV
MRDASICGLGQAAPNPVDCVIKYFPQELA