PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS31370 (584 amino acids)

SeqID: RR42_RS31370 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599890: acetolactate synthase large subunit[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS31370
MSAVAPTRPESTTAEDTLKQKTRDAGVISGGHLVARALKNEGVDTIFTLCGGHIIDIYDG
CVDEGIRIIDVRHEQVAAHAADGYARQTGKLGCVVTTAGPGCTNAVTGVATAFRSESPII
HIGGQGALSQHKMGSLQDLPHVDMMSAITKFAATIPSTERVADMISMAARECFNGAPGPA
YLEIPRDVLDREVDVSRAVIPRPGHYRASTRSIGDPRDIERLADILVNAERPAILYGQQV
WTARGHEEAIALLKGLDIPGYFNGASRGLLPPGDPHHFDRTRTQAFANADVLIIVGTPFD
FRMGYGKRISKELTLVQIDMDYRTVGKNREIDLGLVGDPGAILGAVLQAASGRIKNDKRQ
ARQKWMGQLTEAEAVAAEKLMPLFRSENTPIHPYRVAYELNEFLSEDTVYIGDGGDVVTI
SAQAVRPRRPGQWMDPGALGSLGVGTGFAIAAGLANPNKEILCYYGDGSFGMTAFDMETA
NRFGVPYLAVIGNNSAMNQIRYGQLAKYGEARGNVGNLLSDVPFSKFAEMLGGYGEEVRD
PGKIAGALQRGREAVQRTGKSAVINIWVDPREYAPGTKNQTMYK