PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS32440 (346 amino acids)

SeqID: RR42_RS32440 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 126951: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS32440
MGYEFVEFASPDPAALGRTFERFGFHAIAQHRHKNVKLFRQGEMNFIVDAEPDSFATRYA
SEYGLSICAVGIRVNDAATAFARAVDAGAWPFEAGTVGPMELNIPAIQGIGRSIIYFIDR
WRGKEGRPGDVGDISIYDVDFRALAHAATDTAATTAGAGLARVDHVTQAVDPGHLEEWLD
FYRKVLGFREIHEVNAGWHVASDSRVLLSPCGLIRIPIYEKGTQRHDQMEHYLSGHHGEG
IQHIALATDDLVASAAALARNGVRFVEPPAAYYDTVDARVPGHGLDLAALRRYGILVDGA
LRADGTREAFLQAFARREAGEFFFEIVQRDNYHGFGEGNLPALEAA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory