PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS33045 (355 amino acids)

SeqID: RR42_RS33045 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16078522: pyruvate dehydrogenase (E1 alpha subunit) [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS33045
MATVATFDIEYTQFLDPQGEPTQALPAFALDPEALLPLYRAMVLTRQFDLKAIALQRTGQ
IGTFASALGQEAVGVGVASAMRAQDVLVPSYRDHAAQFQRGVSMTESLLYWGGDERGNAF
AAAPHDFANCVPIGNQVCHAAGIAYAMKLRREPRATVCLLGDGGTSKGDFYEGMNMAGAW
HAPLVLVVNNNQWAISMPRSQQTAARTLAQKAIAAGIPGLQVDGNDVVAVRQVTLDALER
ARGGGGATLIEAITYRLGDHTTADDASRYRDSEQVRQHWLLEPVARLRNYLLRLGAWDAP
REDALAKDCAAQVAAAVQAYLATPLPETAAMFDCLYASLPKALAGQVATAHRFAP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory