PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on RR42_RS35150 (523 amino acids)

SeqID: RR42_RS35150 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 416605: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>RR42_RS35150
MTAEPQVQPPGTPFNFAQHLIACNARRPGKTAYIDDHGAMSYGELAERIRRVAAALQASG
IHREERVLLLMHDGNDWPVCFLGAMYAGIVPVAVNTLLTADDYAYMLQHSRAQAVLVSGA
LLPVLQQAMAQGGHEAGTVIVSQPAGPLPDGMIALDGWIDRTAPLAAPASTSPDDPGFWL
YSSGSTGRPKGVLHSQGNPYWTAELYAKPVLSLGEADICFSAAKLYFAYGLGNALTFPLS
VGATVVLMAERPTPEATFRRWLDYQPTVFFGAPTGYAGMLAAPGLPTREQVSLRLCSSAG
EALPADLGERFTAHFGCEIIDGIGSTEMLHIFLSNRPGQVRYGTTGWPVPGYAVELRDED
GHAVPDGDVGDLYIQGPSAALMYWGNREKSRETFRGGWTKSGDKYARNADGSYSYAGRSD
DMLKVSGIYVSPFEVEATLAQHPAVLEAAVIGVPDPAGLTKTKAFVVLKPGAQVSETELK
AFVKERLAPYKYPRVIEFMGALPKTATGKIQRFRLREMEGAPA

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory