PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20101 (426 amino acids)

SeqID: SM_b20101 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [2 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic, CytoplasmicMembrane[matched 8472786: Malate:quinone oxidoreductase (Malate dehydrogenase [acceptor]) (MQO)]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.12
    CytoplasmicMembrane    0.88
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic (This protein may have multiple localization sites.) 9.12

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20101
MPAESGGRGCGLYDYCIIGGGIVGLATAMALQERMGGASIVLLEKERELARHQTGHNSGV
IHAGIYYAPGSLKAKLCREGAEATKEFCTGNGISFETCGKLLVATNDAEIERMESLEERA
QQNGIEYTRLSKSQLRSDEPNIAGLSALLVHATGIVDYSAVCRAMAERIEVRGGEIRCGV
EATAIAEEDGGVRIASATGRIEARRLIACAGLQSDRIALMAGLSIDHRIVPFRGEYYVLP
ASKAGVTRRLIYPIPDPNLPFLGIHLTRTIDGGMTVGPNAVLGFAREGYPKGSFKAADVA
NMAAFPGFWKMAAKNWRSAITEFANSASRFRYLRECRKYCPSLTIDDLAVPQAGIRAQAV
MADGSLVHDFLFKQTERMLHVCNAPSPAATSAIPIGRMIVDRLLDGAPPATERSQSLHGT
HAQLHR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory