PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20261 (345 amino acids)

SeqID: SM_b20261 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596449: probable L-malate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20261
MSETTTLTTTALQERVEAIFRKGGLNVVQAGALARVIVAGERDACKSHGIYRIEGALRTV
KAGKVKPDAEPEIVAQEASAIVKVNAGGGFANPAFELGLPVLAERARKHGIAALAINDCT
HFSALWPEAEALTGEGLAGLVMCPSYATVAPTGGNKPLLGTNPFAFGWPRAGKPPYVFDF
ATSVAARGEIELHRRAGKPLPEGWAIDAQGNPTTDPEAALAGAMLPFGGHKGSAIGTMIE
LLAGIMIGDLTSPEVLDYLGTTTLAPFHGELIVAFSPQAFAAGRPGDPFARAELLFEAIV
GQGARLPSQRRFAARAKSEAEGITLSAAEIEQLDRLLALGLDAVA