PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20402 (462 amino acids)

SeqID: SM_b20402 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2493995: Diheme cytochrome c-type]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.97
    OuterMembrane          0.01
    Periplasmic            0.01
    Extracellular          0.01
    Cytoplasmic            0.00
  Final Prediction:
    CytoplasmicMembrane    9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20402
MRALRVAIGIAAVILVAAAAFFLFAWRSEIPEDTTAAEARFAAELVAKGAQLAALGNCIA
CHTVPGRPAFAGGLALPTPFGTIYSTNITPDRETGIGGWSEAAFERAMREGVDREGSHLY
PAFPYEHFTRVSADDNRALYAFLMTRVAVKAEALENDLPFPLKFRPLLAGWKLLFLDSGE
REPDPGQSDAWNRGRYLAEGLGHCGACHTPRNPFGAEDRDRHFGGGEAEGWQAYAINTES
KAPIPWDEQSLAFYLRNGWHEFHGVSRGPMAEVTGNLAFLPDSDIAAIATYVRSIMGAPT
PEREQRAAQLREAFEGQRPEQAADSQRSPVSASGSQPGEAIYLAACASCHEGGRRQPFGG
LNFELSTAVNAPNPQNIVNVVLFGLPPADGEASAVMPAFRHLLNDQQVADLLAYMRERFS
EEPPWAGLVEQTARTRSGTYKVAVRPSDGIERAPHHVGAEED