PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20496 (536 amino acids)

SeqID: SM_b20496 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20496
MNETIADAGSYDFIVIGAGSAGCVLANRLSADPKNRVLLLEAGGSDRYHWVHVPIGYLYC
MGNPRTDWMMRTAAEPGLNGRSLPYPRGKLLGGCSSINGMIYMRGQAADYDGWRQAGNTG
WGWDDVLPYFLKSEDNFRGKSPMHGAGGEWRVERQRLSWPILDAFRDAAEELGIPKAEDF
NTGDNEGSGYFEVNQRGGVRWNTSKAFLRPAMKRPNLRVLTGAETERLIFDGRRTKGVRF
RLNGRIQVARATREVILSAGAINSPKILELSGVGRPDVVSAAGAEVVHDLPGVGENLQDH
LQIRTVFRIEGAKTLNQLYHSIFSRIGMGAEYMLRRSGPLSMAPRQLGIFAKSSPSVATA
DLEYHVQPLSTDRLGEPLHRYPAVTVSVCNLRPESRGSVHVTTAESSAAPDIRPNYLSTP
GDRLLAAHAIRHARNLMATKAIARFRPAEMLPGSEFQSEDELIRRAGDIATTIFHPVGTC
KMGTDPMAVVDPSLKVHGLDGLRVVDASIMPSIVSGNTNSPVIMIAEKAAEAILHR