PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20497 (509 amino acids)

SeqID: SM_b20497 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 16077994: glycerol kinase [Bacillus subtilis subsp. subtilis str. 168]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20497
MGDYLLGLDAGNTVIKAVIFDRKGKEIASAAAEGHSRMPYPGHVERDLDELWENARRVIR
KCIDEAGIDAGELAAIGCAGHGNGLYALDHEGRPLLGIQSLDTRAAALVEEWTSQGVGDR
TYPIGQQRPWPSQTPTLLAWMKRYRPEVFASIGTIFLCKDFIVNRLTGARVSDVSDMTGC
GLLNVAGRHYDRELMAAYGLCESMDLLPPLVESAEIAGRITEAAAAGTGLAAGTPVVGGL
FDVVASAIGSGVTRTGAASIIAGTWSINQVIIERPELQGPVFMSSTFDRDRYMAIESSAT
SAANLEWLVREFFSEVRSDGRSPFDLCCELASSSDPAFDDPIYHPYLYGAQQDGSARAGF
YGIAGWHTKGHLVRAVLEGVAFGHRQHIETMRKAGAAFDEAVLSGGGSRSLIWPQIFADV
IGVPVSVAGSRETGALGAAIAAATGVGIFSDFAEGAAAMVKTERHYLPNRALEAHYARRY
ALYRDIADVMTPLWRRLSAMQAITAGVAA