PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20588 (261 amino acids)

SeqID: SM_b20588 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3122156: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20588
MTHFTPTEMMTVAAARALSNDDVCFVGIGAPSAACNVARLTNAPDITLIYESGTVGTKPD
VLPLSIGDGELCDTALFTVSVPEMFRYWLQGGRITTGFLGGAQIDRFANLNTTVVGPYDH
PKVRLPGGGGAPEIASNCGRIFITMALTKRGFVERLPFVTSMGHGEGGNHRERLGLTTSG
PTRVITDLCILEPDPETKELTVVSMHPGVARDQIAGNCGWPIKFAETVIETPAPTETELV
VLRDINARTKKAHKAAGKEAA