PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20895 (355 amino acids)

SeqID: SM_b20895 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Periplasmic                   [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 1706206: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            10.00
    Extracellular          0.00
    CytoplasmicMembrane    0.00
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20895
MKFFTSLLAAAAITVAGFAAPAVAQEKGMVGISMPTKTSTRWISDGETMEKLFKEAGYTP
DLQFADDDIPNQLAQIENMVTKGAKVLVIGAIDGTTLSDILQKAADAGVKVIAYDRLIRD
SGNVDYYATFDNFQVGVLQATSLVEGLKLDSATEPKNVELFGGSPDDNNAFFFYDGAMSV
LQPLIDSGKIVVKSGQMGMDQVGTLRWDGAVAQARMENLLSSAYTDAKVDGVLSPYDGLS
IGIISALKGVGYGSGDMPMPIVTGQDAELPSVKSILAGEQYSTVFKDTRELAKVTVNMVN
AIMDGKEPEVNDTKTYENGVKVVPSYLLKPVSVDKSNAKDVLVGSGYYTEDQLNN

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory