PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b20903 (453 amino acids)

SeqID: SM_b20903 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [12 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84029538: Xylose transport system permease protein xylH]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b20903
MAMADITKANQTRADQKPGAQAGRARTTDENPVKRFFRATEIDTRLLGMVGALIIIWLGF
QVMTGGLFDGLFLKPRNLWNLTVQTSSVAVMATGMVLVIVTRNIDLSVGSVLGFCGMIMG
VLQAQVLPQYLGLGHPATWAITLACGIAVGGAIGALHGSIIAFLNVPAFIVTLGGLLVWR
GATWFVTSGQTVAPMDATFRLMGGGTEGSIGATASWIVGSLACIAIVGAILNSRKQRKRF
GFPLRPVWAEYFLSILGCALVLGAVAVANHYYWPVNIARRYADANGIAWPDGGLQISHGI
AIPVLVAIVVGIVMTFIATRLRFGRYVFALGGNPEAAELAGIKTRWVTVKIFTLMGVLCA
IAAAISTARLNAATNAQGELDELYTIAAAVIGGTSLAGGVGTIAGAMIGALVMQSLQSGM
VLLGIDTPFQRIVVGVVLVTAVWLDTVYRARAK