PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b21135 (280 amino acids)

SeqID: SM_b21135 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Periplasmic                   [matched PS01039: SBP_BACTERIAL_3 Pattern - Periplasmic]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        OuterMembrane                 [matched 1172055: Major cell-binding factor precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            7.50
    OuterMembrane          2.49
    Extracellular          0.01
    CytoplasmicMembrane    0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            7.50

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b21135
MISRFTVAASFVAAVLAAMPAQAQQASSKLDEVLSRGHLILGTGSTNAPWHFKSAEDKLQ
GFDVDMGRIIAKALFGDPEKIEFVNQSSDARIPNITTGKVDITCQFMTVTGERAQQIAFT
IPYYREGVGLMLKADGKYADYEALKAAGSSVTISVLQNVYAEDMVHAALPEATVDQYESV
DLIYQALESGRADAAATDQSSLAWYMTQNSGRYKDAGYGWNPQTYACGVRRGDQDWLNFV
NTALHEAMTGVEFDFYAKSFKTWFGKDLTPPHIGFPIEYK