PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b21214 (240 amino acids)

SeqID: SM_b21214 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597263: probable hydrolase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b21214
MCRPAKHVNSKSKGPGLDTSSSAIFTKNFAALLFDMDGTLLNSMAVVERVWGSWALRNGI
DPVALMKIVHGVRAVDTIRALGLPVDPEQEARILAEAEIADVEGIVEIPGAVSFLKTLPP
ERWAIVTSAPLELAARRLEAAGIPVPRHMVTGEDVSVGKPDPQGYLLAAQRLGVRAEDCL
VFEDAPAGVLAGKSAGAEVAVITGAHAAAAEMPHIMLSHYSDVEARLVEDGWLSLHRRRG

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory