PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SM_b21590 (322 amino acids)

SeqID: SM_b21590 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [11 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 18266861: Inner membrane ABC transporter permease protein yjfF]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SM_b21590
MKQKYLPLTATILIFVLSYALCVAQYPNMLSTRVIGNLLTDNAFLGIAAVGMTFVILSGG
IDLSIGAVIAFAGVFLAVVLEHGGMHPLVAFALLLAITTLFGALMGAIIHYLEMPAFIVT
LAGMFLARGMAFVLSIDSIPIKHPFYATLKSLYFKLPGGGRITLIGGLMLFVFAVGILIA
HRTRFGTNIYALGGGTATAKLMGVPVAATTIRIYALSGLLAGLSGIVFSLYTSAGYSLAA
VGVELDAITAVVIGGTLLTGGSGFVAGTLVGILIQGLIQTYITFDGTLSSWWTKILIGLL
LFAFILLQKGIIHLSRPERQRA