Running PSORTb v3.0 on SMa0081 FitnessBrowser__Smeli:SMa0081 (218 amino acids)
SeqID: SMa0081 FitnessBrowser__Smeli:SMa0081 Analysis Report: CMSVM- CytoplasmicMembrane [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- CytoplasmicMembrane [3 internal helices found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 84027924: Inner membrane amino-acid ABC transporter permease protein yecS] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 10.00 Cytoplasmic 0.00 Periplasmic 0.00 Extracellular 0.00 OuterMembrane 0.00 Final Prediction: CytoplasmicMembrane 10.00 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>SMa0081 FitnessBrowser__Smeli:SMa0081 MIRAFGWNEFLVIVAAAQWTIALSAIAFAGGSVGGLLVALMRVSETRALRLFATGFIRVF QGTPLLMQLFLVFFGMNIFGFAINPWIAATIALALHASAFLGEIWRGCIEAVPKGQREAA TALGLRYFRSMRHVILPQAARIAVAPTVGFLVQLIKGTSLASIIGFTELTRQGQIINNAT FSPFLVFGTVAAVYFLLCWPLSLIARRMETRFSRATAR
Lawrence Berkeley National Laboratory