PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0306 (546 amino acids)

SeqID: SMa0306 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0306
MRIDSLFHSVVGACLLFSSPVMADVLLNGRNATPEMIVRVAKGEAVTVDGESLDKVERAY
AVLLQGAKEGQEIYGLTVGVGWNKDRKMVDATGELTPELMEASREFNEGLLRAHSVGVGP
DAAVPVVRAAMAVRLNNILTGGPGVQPHVAEMLLAFLNKGITPTMPSRGSVGQADMTLLS
HIGLAMLGEGDVDYQGRRMSAAEALKAAGIEPLKPFGKDGLAILSSNAYAAGLAALAIHD
AEQLLSTSRLVYALSLEGLNGNVSPLLEDVAALRPFPSHLSSTTELRALLEGSYLWQADD
KRILQDPLSFRTAPYLLGSFADSLARTKALVQIQINSSDDNPGIVVGVEPKSDLFQARRG
YVEGGAVLPTANFEPLPWIIAFEELGIVLAHHTTASSERVLKLNNPTHTKLARYLGTENT
HHAFLVVEAPLMALATENRALAQPTSFDSRPIAGGVEDVGTNAPLVVERIRAQIDNSFTI
LSMEMLHAAQAADLRLKGHPERKLSTATTSFHDAFRQRVPFLDRDRSMTPDIAAGTAFLK
EYALTN