PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0398 (456 amino acids)

SeqID: SMa0398 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599644: histidinol dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0398
MTLRPQLARYKDKTMTSVSFYEYSKLNAEEKAALLRRSETDISGFIEKVAPILEAVRTEG
DKALARFGRELDKADVTEANLKVTAAEFDAAFKLVDASVLESVQFGIDNIRKFHEEQKPE
AMWLKEIRPGAFAGDRFTPIQSVALYVPRGKGSFPSVTMMTSVPAVVAGVPNLAIVTPPA
PDGSVDAATLVAARLAGVETVYKAGGAQAVAAVAYGTETVKPALKIVGPGSPWVVAAKRS
LSGVIDTGLPAGPSEVMILADDTVHGGLAALDLLIEAEHGPDSSAYLVTHSGRVAEEALA
ALPEHWARMTEQRTAFSKTVLSGKTGGIVLTSSIEESYEFVNAYAPEHLELLSEQPFIHL
GHITEASEILMGTHTPVSIANFSLGPNAVLPTSRWARTFGPLSVTDFVKRSSIGYVTAPA
YPEFARHSHNLAIYEGFSSHALAVSPVRDAYLKKGA