PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0489 (255 amino acids)

SeqID: SMa0489 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 121397: Glutamine transport ATP-binding protein glnQ]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.99
    Cytoplasmic            0.01
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.99

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0489
MIEATFMNKPNDTMIQLIGVGKRFGQFEALKQVSLEVRRGEKIVLCGPSGSGKSTLIRCI
NRMEEHTSGRIIIDGRELTDRTKDINAVRREVGMVFQSFNLFPHMTILKNLTIAQRLVRK
TPEKEAKEVAMHYLKRVKIPEQASKYPVQLSGGQQQRVAIARALCMKPQIMLFDEPTSAL
DPEMISEVLDVMVDLARDGMTMICVTHEMGFARSVADRVMFMDGGQLIEEGDPETFFANP
RNERTALFLRQILRH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory