PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0495 (272 amino acids)

SeqID: SMa0495 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 15599060: probable amino acid binding protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    CytoplasmicMembrane    0.12
    Extracellular          0.11
    OuterMembrane          0.00
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0495
MNAMKNWQTSLTGLITAVLLSAAPANADTLRVGMECTYAPFNYRTSDGKLEGYDVDVAKG
ISEIIGVDFEYVCQEWDGMIPALLANKFDLIIASMSITDKRKEQIDFSSPYRNSVGRIVG
PVGKDLKLFDDKGQPVVGNFDGLRIGVERASTYFEWFSAKLPKADLVLYDSNEAMYLDLK
NGRVDVIMTNPMKAHLSFLSGEGKGKYEFIGPEVNEPKFFGPGVGVGLRKGNDELRDKIS
AAIRKLIREGKLKEYALKIFPFQIHDDAWAEE

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory