PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0563 (329 amino acids)

SeqID: SMa0563 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596936: probable oxidoreductase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0563
MQKRKLGQGLEVSALSLGCMGYGKARDIPDRPQMIELLRRAVDLGMDFFDTAEVYGPWTN
EEMVGEAFAGMRDKVKIATKFGWDIDQSTGEHGGGVNSKPTQIRSAVEGSLKRLRTDFID
LLYQHRVDPDVPMEDVAGTVKDLIAEGKVRYFGLSEAGAESIRRAHAVQPVAALQSEYSL
WTREPEAEIIPTLEELGIGLVPFSPLGKGFLAGKIDASTAFAANDFRSQIPRFAPEAREA
NQALVDLIRSVGERRSATPAQVALAWLMAQKPWIVPLFGTRKLERLEENLGALSVTLSDD
DLEQIESGAAAIRIEGARYPEEMLRRSGR