PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0717 (569 amino acids)

SeqID: SMa0717 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595353: transcriptional regulator PcaR[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0717
MDDKAGLGGLEDRGAPAGAAALAKGLALLDLIAEAPKPLRFADLQKMSGVPKPTLARMLK
TLMVFRLIRQDETTGAYLLGHRFVELSHRVWDKFDLVSAAIPELDRLASELGETVALCRL
DGQRVVYLEERSSGGLGVLIEVGRRVPVHCTAAGKVLLAFQEPSFARSLAGQITYDRFTP
NTITDSQALEADLVLTRARGYAVSYEEHLAGVNSVAAPIAGRDGVPLGALVVLGPASRLD
SSAIHPAGRELMAAARRITGTVGAVAISSGPRPRTRSGGFSDVQCVLPWGAQLGEAPVWV
EREKRLYWVDILHPAVHRFDPVTGKNESCNVAKLVSAVLPTRNEGLIVASQDGVEHFDFD
RGDFNPFAEPEPGLPENRLNDAKVDPSGRLWVGSMRLDVSRPTGSLYRLTSAGEVTRAGS
GFTVANGLAWSPDSSTFYFVDTVPGIIYAYDFDAREGSIANRRVFVTVPEAEGRPDGLAV
DADGGVWCAIWDGWRVNRYRPDGRLDRAVELPVPRPTSVAFGGDELATLFITSARTRLPA
STLTEAPLSGGIFACNPGARGLPTSLFGV