PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa0878 (608 amino acids)

SeqID: SMa0878 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 3915705: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa0878
MCGIVGIVGNQPVSERLVEALKRLEYRGYDSAGVATIDAGTLQRRRAEGKLVNLESRLRE
EPLAGTIGIAHTRWATHGAPTERNAHPHFTEGVAVVHNGIIENFAELKDELAAGGAEFQT
ETDTEVVAHLLTKYRRDGLGRREAMHAMLKRVKGAYALAVLFEDDPSTIMAARNGPPLAI
GHGSGEMFLGSDAIALAPFTNEITYLIDGDWAVIGKTGVHIFDFDGNVVERPRQISTAAA
FLVDKGNHRHFMEKEIYEQPEVIAHALGHYVNFIENRVVPISDAIDFGKVPSLAISACGT
AYLAGLIGKYWFERYARLPVEIDVASEFRYREIPLSPQSAALFISQSGETADTLASLRYC
KEHGLKIGAVVNARESTIARESDAVFPILAGPEIGVASTKAFTCQLAVLAALAVGAGKAR
GTISGEEEQALVKSLAEMPRIMGQVLNSIQPKIESLSRELSKCHDVLYLGRGTSFPLAME
GALKLKEISYIHAEGYAAGELKHGPIALIDENMPVIVIAPHDRFFDKTVSNMQEVAARGG
RIILITDEKGAAASKLDTMHTIVLPEVDEIIAPMIFSLPLQLLAYHTAVFMGTDVDQPRN
LAKSVTVE