PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa1377 (471 amino acids)

SeqID: SMa1377 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599679: |Glu-tRNA(Gln) amidotransferase subunit A|5013974 - 5015428]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa1377
MTALENLSIRKLAAMVRAREISAVDVTTHFLGRIVAYDDALCGFNVPAPEAALDAAHDLD
TYLNAGGEAGALAGIPLSIKDTADVAGLPSAGASASRSGRTATADATVVARMKAAGGIVL
GKANCHELAFGGPSFDLPFPPARNPWNLDRFPGGSSSGSGVTVAAGLCLGSLATDTAGSI
RLPATMCGVFGLKPGHDTLPLDGIAVLAATMDHVGPVARTADDTRILFDVMAGRSPGSPF
VGSLKGLRIGVPENEWDVGRLIHPDVRAAIDGAIEVARSEGADIVPLRLPSLEDFHAPGT
VLMMCEVAAEHAASVRAAWDKFGAIFRARALVGEGIAVHDFRLAERLRPVLRKRLLDAMS
NVDCLLVPGALAPPGPLASVDPFYFMKDPIPNIVANYTGFPALAFPAGFGGDGMPVGVQI
MGVPRSEHRLLDIAESFERADPSRFAARTPPGLEGRPEPCLFKLELPARAM

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory