PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa1459 (334 amino acids)

SeqID: SMa1459 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15596449: probable L-malate dehydrogenase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            6.49
    CytoplasmicMembrane    3.24
    OuterMembrane          0.14
    Extracellular          0.14
    Cytoplasmic            0.00
  Final Prediction:
    Unknown (This protein may have multiple localization sites.)

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa1459
MTPVETSWEEIEAVCLEALTLHGAAAETARAVAGAITRAEADGNRVCGLYYLPIFCRHLA
IGKVDGEAVPEVTTRGVTVTVDARSGFAHPAIAAGTPALIDLARQAGLAAMAVRNSYNCL
ALGHHVRPLADAGLIGICVSNAPASVAPPGATRALFGTNPLAFAVPSKEGAPTIVVDQSM
SAVTKTEMILRRDRGEAIPIGWAQDGNGQPTTDAATGLEGSLLPAGGRKGANIALLVEVL
AAALTGSALSTEASAFGNEEGGPPHVGQFLIAIDPDHFAAGHFSEAMDNLVASHDAAGVR
LPGHFGRKQPVCVDADLWKKAVLLSKSKNRQKPG