PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMa2037 (750 amino acids)

SeqID: SMa2037 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 118508: Cytoplasmic membrane integral membrane protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMa2037
MNFDPSHSKRSFSSVGTRPIRPDGVDKVTGRARYGADFNMPGQLVGRILRSPHAHAIIRK
IDTLKAAQLPGVKAVLTAADLPDLTDGDAAMYDILDNCMARKKALYDGHAVAAVAAIDAR
TAKQALKLIEVEYELLPHVTDVDQAFAPDAPLINDTIFTTGVDPKPDRPSNVSMRSQFGH
GDVDAGMARADFVVERTFKTEQTHQGYIEPHACVASVSSDGTADLWVCTQGHFVYRQHCA
QLLGMDASKLRVTSSEIGGGFGGKTHVWAEPVALALSRKAGRPVKLVMTRDEVFRASGPT
SATSIDVKIGALKDGTIIAADATLRYSCGPYAGAWAEVGAMTAFACYKLENVRTVGYEVL
VNRPKTAAYRAPSAPMAAFAVESAIDELAKKVGMNPIDFRIRNAAQEGTKASYGPVYGPI
GIGPTLEAVKNHPHMKAPLGRNQGRGMACGFWFNFGGQTCTDLNIGMDGTVSLAVGTVDV
GGSRASLSLVAAEELGIDYSQVRTVIADTSSLGYNDMTDGSRGTFSSSMATISAARNAIK
ILRERAAQMWDIPVEDVTWEKGHAVAKGETHGNLPKLSLKEIAAASGTTGGPIAGHSEIV
ADGAGVSFATHICDIEVDPETGATKVLRYTVVQDAGKAVHPTYVEGQYQGGAAQGIGWAL
NEEYIYGNDGRLQNAGFLDYRIPVCSDLPMIDTQILEIPNPNHPYGVRGVGETSIVPPLA
AVANAVSNAVGVRMLHIPMSPPRILAALEA