PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00110 (777 amino acids)

SeqID: SMc00110 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [4 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 118555: Alcohol dehydrogenase [acceptor] precursor]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    9.86
    Periplasmic            0.14
    Cytoplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    9.86

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00110
MVIVLTAVVFAVIGLALCGGGTRLLLLGGSPYYLIAGLGFLLTAFLLFRRRAAALWVYAL
VVLGSLAWAIWEVGFDWWQLGPRGGVIILLGLWLLTPWIRRPLGFVSPTGEQYGASAWPL
ALVSLLSVGVALYSMTQDPHDIRGDLPGEVAANANLGGNVPPGEWHQYGRTPFGQRYSPL
DQIRPENVANLQVAWQYQTGDVKLPEDVSETTYQVTPLKVKDTLYVCTPHNWAIALDAAT
GQEKWKYDSNSGMNPDRQHQTCRGVTYWADPAAAPGSPCAERVYLPTSDARLIALDATNG
EVCTSFADNGVLHLEQGMKHNPAGYYYSTSPPVAVGDRLIIGGAVNDNYSTTEQSGVIRA
FNINTGALIWNWDSGNPDVTAPLPPGQTYTTNSPNSWSVFSYDEGLGLVYIPMGNQVPDQ
LGMGRSEHVEKYSSSIVALDINTGAVRWVRQTVHHDLWDMDVPAQPALLDITREDGTVVP
ALVGPTKQGDIYVLDRRSGEPIIPIEEVPAPGGAIPEDFTAPTQPVSGLTFMPPPLMERD
MWGISMFDQLACRIEFRTLKYEGRYTPPSLEGTIVYPGNFGTFNWGSVAVDPERQVMFGM
PTYLAFTSRLVPRDQIAPKGEGEKGSEQGLNRNEGAPYGVFMGPFLGPLGIPCQAPPWGY
VAGADLRTGKIAYKHKNGTVYDMTPLPLPFKLGVPGIGGPMITKGGLAFLGAAVDDYFRA
YDLTTGEQLWEARLPAGGQSTPMTYTVGEKQYVLIVAGGHGSVGTKPGDYVIAYTLP

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory