PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00641 (531 amino acids)

SeqID: SMc00641 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 2494084: Glycerate dehydrogenase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00641
MAPRVLVSDELSETAVQIFRDHGVEVDFQPKLGKDKEKLAEIIGNYDGLAIRSATKVTEK
LIAAATNLKVVGRAGIGVDNVDIPAASRRGIIVMNTPFGNSITTAEHAIALMFAVARQLP
AADGSTQAGKWEKSKFMGVEITGKVLGVIGAGNIGSIVCARAIGLKMHVIAYDPFLSKER
AEEMGVVKVELDELLAQADFISLHVPLTDKTRNILNAEAIAKAKPGVRIINCARGGLVDE
KALAEALKAGHVAGAGFDVFEVEPATESPLFGLPNVVCTPHLGASTTEAQENVALQVAEQ
MSEYLVKGAVTNAINMPSITAEEAPILKPFIRLADVLGAFVGQVTESAIKEIEILYDGST
AAMNTKALTSAALAGLIRPQVADVNMVSAPVMVKEKGVILSEVKRDKTGVFDGYIKLTVK
TANQTRSVAGTVFSDGKPRFIQIKGINLDADVGNHMVYITNTDVPGMIGFIGSTLGDAGV
NIANFQLGREKQGGDAIALLYVDGPVSEIVLDKLRANEAIRQAKPLVFNID