PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00669 (499 amino acids)

SeqID: SMc00669 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600291: Cytoplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00669
MGEMISLDGPLTWREIASIAEGASLDLSGPARLRIAQARRIVDALVERGIRGYGINTGVG
ALCDVIISRENQQALSRNIILSHACGVGDPLGRVEARAVMAAQIANLTHGYSGVRVETAE
MLLALLNADIIPLIPSRGSVGYLTHAAAIGLVLIGHGSAMQGTERLSGADALARLGLAPL
RLEAKEGLSLVNGTPCATGLAALALARTERLFAWADAAAAMTYENLGSQANAFAELPLAL
RQSPGLSAVGEGLRDWLADSPMLAGTAGTRTQDPLSLRAVPQVHGAARDAFGQVAEIVDR
ELASVTDNPAVAGSPEAPEVHSQAHAVGAALGLAMDSLAVAVAEVAAISERRIDRLVNPL
VSGLPAFLAGDSGVSSGFMIAQYTAAALVAENRRLAAPASLDGGITSALQEDMLTHATPA
AWKALSIVDNLERILAIELLAAAQAYELQPQAQGKAQRTAALYGHIRSAIPAYRDDRPMN
EDFDRMRRLMRAAPAHGQL

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory