PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00673 (461 amino acids)

SeqID: SMc00673 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15600299: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00673
MTASSAHRLFAEQALLPTGWSENVAISVDAAGRILAVEAGQSKAPGDEHLSGPIVPAMAN
LHSHAFQRAMAGLAEVAGTGDDSFWTWREEMYRTVGLVDPDDLEAIAAKLYVEMLKGGFG
RVVEFHYLHHQLDGTPYADPAEMSLRILRAAQTTGIGLTHLPVFYAHANFGGAAPSAGQR
PFLHDPDRFLALLERLSPACNATGARLGYAIHSLRAATPEEMREILQSSPLTGPIHIHVA
EQPREVEDCLAWSGRRPVEWLLDNMPVDERWCAIHATHMTPDETRRLAHSGAVAGLCPAT
EANLGDGIFPAVDFVAAGGRFGVGTDSHVATSVAEELRLLEYGQRLRDRRRNRLAAPGAS
VGRSIFDAALAGGAQAAGQAAGMEEPGIRVGAMADLVVLDGSNPYIAAASGNQILDRWLF
ALGGDTVRDVMIAGEWKIRNGRHDREEDIDRAFARVLNKLK

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory