PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00762 (478 amino acids)

SeqID: SMc00762 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595493: probable glutamine synthetase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00762
MSSKRSVAQETAKVSKSSKIPLALHAARGVKTWTEAVDWLKIRGIEDIECITPDLAGVAR
GKMMPTSKFTSNTSLALPSAIYRHTISGEYPEETGQFRYDSRDSDIKLVPDLSTLSIVPW
ESDPTAQVICDIVGSQGEQISYTPRNVLKRVIELYRQKGWKPVVAPEIEFYLVAQNDDPD
YPLRPPKGRSGRSILGGQGYSIAGINEFDELIDDIYHFSEKQGLEIDTLIHEEGPAQLEI
NLRHGDPIELADQVFLFKRTIREAALKHGIYATFMAKPMQGQPGSAMHIHQSVIDIETGR
NIFSNPDGSPSQAFFSFIGGMQLYVPRTLSMMAPYVNSYRRLTPDMSAPVNTAWGYDNRT
TAFRIPVSDPVARRIENRLPSSDANPYLALAASLGCGYLGIIEGLQATPPTEHTANEGEI
ELPRGLLEAVSLLESAPALAEVFSAEFIAIYAGVKRGEFETFMQVISPWEREFLLLNV