Running PSORTb v3.0 on SMc00797 (417 amino acids)
SeqID: SMc00797 Analysis Report: CMSVM- Unknown [No details] CytoSVM- Unknown [No details] ECSVM- Unknown [No details] ModHMM- Unknown [1 internal helix found] Motif- Unknown [No motifs found] OMPMotif- Unknown [No motifs found] OMSVM- Unknown [No details] PPSVM- Unknown [No details] Profile- Unknown [No matches to profiles found] SCL-BLAST- CytoplasmicMembrane [matched 62288063: D-amino acid dehydrogenase small subunit] SCL-BLASTe- Unknown [No matches against database] Signal- Unknown [No signal peptide detected] Localization Scores: CytoplasmicMembrane 9.82 Cytoplasmic 0.15 OuterMembrane 0.01 Periplasmic 0.01 Extracellular 0.01 Final Prediction: CytoplasmicMembrane 9.82 -------------------------------------------------------------------------------
PaperBLAST (search for papers about homologs of this protein)
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Predict transmembrane helices and signal peptides: Phobius
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>SMc00797 MKTDVVVLGAGIVGISSAIHLARLGKSVVLLDRRGAGEETSYGNAGLIQREGVFPYGFPH NFGALFRYALNNTIDASYHFRALPSLVPFLARYWWHSGFTQHQKIAHLYAPLIEHSIAEH QDLIDASGAGDLIRKDGWMKVFRTEKERDAAYKDAERLSAGFGVNHQKLSTSELKTIEPS IQAELAGGLRWTDPWSIRDPHSLNKAYLAYFQSLGGRLVSGDAATLEHILEGAGWRVATP DGPLEAREVVVALGPWADTVTRKLGYHFPLAVKRGYHMHYGIREGAQLNNWVLDAEKGYF LAPMLRGIRLTTGAEFALRDAPKTPVQLTRAERVAREFFPLAERRDEEPWMGARPCTPDM MPVIGKAPRHEGLWFAFGHAHHGMTLGPVTGRALAQAMTGEKPVIDITPYRPERFLA
Lawrence Berkeley National Laboratory