PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc00884 (574 amino acids)

SeqID: SMc00884 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15595550: dihydroxy-acid dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc00884
MSDKKKELRSRHWYGGTHKDGFIHRSWMKNQGFPDHVFDGRPIIGICNTWSELTPCNSHL
RILAEGVKRGVWEAGGFPVEFPVSSLGETQMRPTAMLFRNLLAMDVEEAIRAYGIDGVVL
LGGCDKTTPGQLMGAASVDLPTIVVSSGPMLNGKWKGKDIGSGTDVWKFSEAVRAGEMSL
QEFMAAESGMSRSPGVCMTMGTATTMASIVEAMGLSLPTNAALPAVDARRMALSHMTGKR
IVEMVHEDLRLSKILTKENFENGIIANAAVGGSTNAVVHMLAIAGRAGIDLCLEDFDRVG
GQVPCIVNCMPSGKYLIEDLAYAGGLPAVMNRIQHLLHPDAPTVFGVPISKYWEAAEVYN
DDVIRPLDNPLRAAAGIRVLKGNLAPNGAVIKPSAASEHLLAHEGPAYVFDTIEDLRAKI
DDPDLPVTEDTILVLKGCGPKGYPGMAEVGNMPIPRRLVEKGVRDMVRISDARMSGTAFG
TVVLHVSPEANAGGPLAIVRTGDRIRLDALKGELNLLVSEEELAARMAAWQPPEQKWHRG
YYKLYHDTVLQADKGADLDFLVGKSGSEVLRESH

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory