PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01224 (324 amino acids)

SeqID: SMc01224 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 71164789: Thioredoxin reductase]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01224
MTARHTKVLIIGSGPAGYTAAIYTARAMLSPVLIAGMEQGGQLMITTDVENYPGYADPVQ
GPWMMEQMLNQAIHVGTEIVNDLVTDVDLSVRPFRIKTDSGTDWTADALIIATGAKAKWL
GIETEPTFMGFGVSACATCDGFFYRNKEVIVVGGGNSAVEEALYLSNLAKTVTVVHRRDA
FRAEKILQERLFAKPNVKVIWDHEVLEYLGTPAKPPMPASVNGVKLRNTKTGETSDMAID
GVFVAIGHAPAVELFKGKLRQKPNGYLWTAPDSTATDVAGVFAAGDVTDDIYRQAVTAAG
MGCMAALEAEKYLAGHMPAAIAAE