PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc01627 (307 amino acids)

SeqID: SMc01627 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           CytoplasmicMembrane           [6 internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 84027910: Inner membrane ABC transporter permease protein ycjO]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc01627
MASVTHSSPRGSRFRISKRALPYVLSLPALLVCIGILIPFFTAVIYSFQRYRLSQPWARQ
FNWGENYLNFFTDPGFWNTLKISLLYAGVTVTLELLLGLGIALLLQRRSTVNNFISIMLL
LPLMTAPALAALMWKLMTNPGFGILSYLASLVGLENFRWASSPDTALLTVVLVDIWVYTP
FIMILLLAGLRSLPTQPFEAAALDGVPRSFVFFRITLPMLTPYILTATLFRLLDSIQQFD
IIYAMTQGGPGDTLTVFQVEAYLNFFQSTNVGRSAALLIILWAITYALSNIFIKNWLRLR
ERARGEA