PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02260 (284 amino acids)

SeqID: SMc02260 
  Analysis Report:
    CMSVM-            CytoplasmicMembrane           [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 2506103: Histidine transport ATP-binding protein hisP]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    10.00
    Cytoplasmic            0.00
    Periplasmic            0.00
    OuterMembrane          0.00
    Extracellular          0.00
  Final Prediction:
    CytoplasmicMembrane    10.00

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02260
MLHERKTRGTVFHGFNERSANERSRAPMTDAAQAIAVTDLHKRFGPLEVLKGVSLSARQG
DVIAIIGGSGSGKSTLLRCINMLELPSAGQISVHGEEIRMKPDGHGGLMPADRKQVQRIR
TQLGMVFQSFNLWQHMTILQNVIEAPVHVLGKTKAEAVETAEALLRRVGLYEKRDAYPAF
LSGGQQQRAAIARALAIQPLVMLFDEPTSALDPELVGEVLSVIGDLAREERTMVLVTHEM
KFARDVANHIVFLHNGVIEEQGPPEAIFGAPKSERLKKFISSIH