PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02341 (477 amino acids)

SeqID: SMc02341 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598778: |glycerol kinase|4013685 - 4015202]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02341
MYLGIDLGTGSVKALLIDGDGKAVAEAARAYPVSSPMPGYAETSPADWWAQTVAAVRACC
DGHGGDVRGIGLSGQAHGLVAVGADAKPLRPAILWADQRATAEMEAVLALPEAVRRPLAN
PVVSGMAGLSLLWLRRNEPATYAAIRRILAPKDWLRLVMTGEAATEPSDASMTLLYDVGA
GRWATDVLSSLSIDPAILAPIVESHSIAGRLSAAAAAELGLAAGTPVAAGLSDTASCLFG
MGQTKPGSTILQVGSGIQIMSVVESIEPRVQPFYNSYRGIGGNLYSMAALQNGGTVFEWA
RTVLGASWAEMYRSGFEENEGNGGVIFLPYVTGERAPLLDPNASAAWANMRLGCTRGQLI
RSVFEGVALAVRDSWDALRGVGVSADRILLTGGGSTDPRWQQMLADILEVPLVPAHDLGN
ATIGAAYLGGMAAGHWRCIEAIPFPDDLGRPIEPRPFQGLDALLPRFRATYRGLKHA