PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02442 (285 amino acids)

SeqID: SMc02442 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15599671: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02442
MTFKAAAVQICSGVDPAGNAETMAKLVREAASRGATYVQTPEMTGAVQRDRTGLRSVLKD
GENDVVVREASRLARELGIYLHVGSTPIARADGKIANRGFLFGPDGAKICDYDKIHMFDV
DLENGESWRESAAYHPGNTARTADLPFGKLGFSICYDVRFPELFRQQAVAGAEIMSVPAA
FTRQTGEAHWEILLRARAIENGLFVIAAAQAGTHEDGRETFGHSMIVDPWGRVLAEAGAT
GEEIIVAEIDVAAVHAARAKIPNLRNARSFVLDEVVPVGKGGAAA