PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc02774 (329 amino acids)

SeqID: SMc02774 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [1 internal helix found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Periplasmic                   [matched 20141669: Periplasmic protein]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Non-Cytoplasmic               [Signal peptide detected]
  Localization Scores:
    Periplasmic            9.76
    Extracellular          0.11
    CytoplasmicMembrane    0.06
    OuterMembrane          0.06
    Cytoplasmic            0.00
  Final Prediction:
    Periplasmic            9.76

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc02774
MSIAKRILSRRAFNALAGAAFVAAMVPATSFAQDVTIPIIVKDTTSFYWQIVLAGARAAG
KDLGVNVPELGAQSESDINGQITILENAVAGAPAAVVIAPTEFKALGKPVDEAAKSVPVI
GIDSGADSKAFTSFLTTDNVQGGRIAADGLAAAIKEATGKEEGEIAVITSLPGVGSLDQR
REGFLDQVKTKYPGLKVVADKYADGQATTGLNIMTDLITANPNLVGVFASNLIMAQGVGQ
AIAENKLGDKIKVIGFDSDEKTVGFLKEGVLAGLVVQDPYRMGYDGVKTALAVSKGEKVE
ANVDTGANLVTKANMSEPKIDALLNPKVN