PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03068 (606 amino acids)

SeqID: SMc03068 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15598390: phosphogluconate dehydratase[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.97
    Periplasmic            0.01
    CytoplasmicMembrane    0.01
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    Cytoplasmic            9.97

-------------------------------------------------------------------------------

Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03068
MSADSRIAAITARIVERSKPYREPYLDRVRSAATNGPHRTVLGCGNLAHGFAVCSPAEKV
ALAGDRVPNLGIITSYNDMLSAHQPFETYPALIREAAHEAGGVAQVAGGVPAMCDGVTQG
QPGMELSLFSRDVIAMAAGIGLSHNMFDAAVYLGVCDKIVPGLAIAALTFGHLPAVFIPA
GPMTTGLPNDEKAKVRQLFAEGKVGRDELLEAESKSYHGPGTCTFYGTANSNQMLMEIMG
FHLPGASFINPGTPLRDALTREATKRALAITALGNEFTPAGEMIDERSIVNGVVGLHATG
GSTNHTMHLVAMARAAGIVLTWQDISELSDLVPLLARVYPNGLADVNHFHAAGGMGFLIA
QLLRKGLLHDDVRTVYGQGLSAYAIDVKLGENGSVKREPAPEASADPKVLATVDRPFQHT
GGLKMLSGNIGKAVIKISAVKPESHVIEAPAKIFNDQAELNAAFKAGKLEGDFVAVVRFQ
GPKANGMPELHKLTTVLGILQDRGQKVAILTDGRMSGASGKVPAAIHVTPEAKEGGPIAR
IQEGDIVRIDAINGKVEVLVEDIALKTRVPAHIDLSDNEFGMGRELFAPFRQIAGAADRG
GSVLFH