PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03102 (781 amino acids)

SeqID: SMc03102 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    2.00
    Cytoplasmic            2.00
    OuterMembrane          2.00
    Periplasmic            2.00
    Extracellular          2.00
  Final Prediction:
    Unknown

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03102
MGVEGIGARVARKEDKRFLTGKGRYTDDMVVPGMKYAVFVRSPHAHATIRSIDATSAKSM
PGVIDVLDGKQLLADGIGNLICGWMIHSKDGSPMRMGAWRPLAHETVRYVGDAVAIVVAD
SVAQARDAAEAVVVDYETLPVVTETLQALGEGEPQIHPEAPGNLIFDWELGDAGAADQAI
AAAAHVTELKIINNRLSPNAMEPRATLGIYDAGDDHFTCYTTSQNPHLARLVMSAFYNVA
PENKLRVIAPDVGGGFGSKIFIYPEEIVCLWASKRTGVPVKWTADRTEAFLTDAHGRDHV
STVKMAFDSSNRITALKVDTIANLGAYMSLFSSCVPTYLYATLLSGQYAIPAIHANVRTV
YTNTAPVDAYRGAGRPEATYLLERTIETAARELGISPAELRRINFIRTFPHQTPVIMNYD
AGDYEASLRGAMEAADWDGFAARKAEAERRGMKRGIGMSCYIEACGLAPSAAVGSLGAGV
GLWESAEVRVNAVGTIEVMTGSHSHGQGHETTFAQVVAERFGVPIDSVNIVHGDTDKVQM
GMGTYGSRSGAVGMSAVFKALDKVEAKAKRIAAHMMEADESDIVIEDGALKVAGTDRSVP
WSQVALASYTAHNLPPGMEPGLKEGAFYDPSNFTFPAGCYICEVEVDPETGRTKIVQFVA
ADDFGNIINPLIVEGQVHGGLAQGIGQALLEGVHYDQSGQLLTASYMDYAMPRADDLPSF
TVTTSNTPCPSNPLGVKGCGEAGAIGSPPALINAITDAIGTNELTMPATPQKVWVAVHSA
H