PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03116 (531 amino acids)

SeqID: SMc03116 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        CytoplasmicMembrane           [matched 416604: Alcohol dehydrogenase [acceptor]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    CytoplasmicMembrane    7.88
    Cytoplasmic            2.11
    Periplasmic            0.00
    Extracellular          0.00
    OuterMembrane          0.00
  Final Prediction:
    CytoplasmicMembrane    7.88

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search PFam (including for weak hits, up to E = 1)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03116
MDTFDYIIVGAGSAGCVLANRLSEDPDRRVLLLEAGGSDNYHWIHIPVGYLYCINNPRTD
WCFTTAAEEGLNGRSLGYPRGKVLGGCSSINGMIYMRGQARDYDLWRQLGCPGWSWNDVL
PFFRKSENHYRGADDMHGASGEWRVEKARVRWAVLDAFQKAATEAGIPETDDFNRGNNEG
SGYFDVNQRSGIRWNTAKAFLKPARNRRNLTILTKAHVRRLILEDGRVAGVEFQHDGTVK
SARARRETVLSAGAIGSPHILELSGIGRPDVLHENGIEVRHELPSVGENLQDHLQLRLAY
KVTGVPTLNEKATSLFGKAAIGLEYLVRRSGPMAMAPSQLGIFTRSGPEKETPDLQYHVQ
PVTLEKFGEPVHPFPAVTASVCNLRPESRGSVHLKGPDFAAAPDIRPRYLTAEADRDVAV
KSIRLTRRIVAQPAFARYKPVEFKPGPDYQTDEELKRAAGDIGTTIFHPVGTCRMGSDPD
SVVDPELRLRGIAGLRIADASIMPTITSGNTNSPTIMIAEKAAEMILAAGR

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory