PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc03925 (542 amino acids)

SeqID: SMc03925 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Cytoplasmic                   [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Unknown                       [No matches against database]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            8.96
    CytoplasmicMembrane    0.51
    Periplasmic            0.26
    Extracellular          0.26
    OuterMembrane          0.01
  Final Prediction:
    Cytoplasmic            8.96

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc03925
MIRTVSTNPYGDQKPGTSGLRKKVPVFQQKNYAENFIQSIFDSLEGFEGQTLVIGGDGRY
YNREVIQKAVKMAAANGFGRVLVGRGGILSTPAASNVIRKYKAFGGIVLSASHNPGGPTE
DFGIKYNVGNGGPAPEKVTDAIYSRSKAIDSYKIADAPDVNLDVEGSQQVEDMTVTVIDP
VADYAELMESLFDFDAIRKLIAGGFRVVFDAMSAVTGPYAKEIIEKRLGAPKGSVMNFIP
LPDFGGHHPDPNLVHARALYETMMAPDAPDFGAASDGDGDRNLIIGKGIFVTPSDSLAML
AANAHLAPGYAKGLAGIARSMPTSGAADRVAEKLGVGIYETPTGWKFFGNLLDEGLATIC
GEESAGTGSNHVREKDGLWAVLLWLNILAARKESALEIARKHWATYGRNYYSRHDYEEVD
TDAANGLIAALRDKLAALPGKSFGALTVETADDFSYHDPVDKSVSKNQGVRILFKGGSRV
VFRLSGTGTSGATLRVYIERYEPDPTRHDLDTQEALADLIAVADEIAEIKANTGRDEPSV
IT