PSORTb v3.0 (Gram-negative)

Running PSORTb v3.0 on SMc04240 (228 amino acids)

SeqID: SMc04240 
  Analysis Report:
    CMSVM-            Unknown                       [No details]
    CytoSVM-          Unknown                       [No details]
    ECSVM-            Unknown                       [No details]
    ModHMM-           Unknown                       [No internal helices found]
    Motif-            Unknown                       [No motifs found]
    OMPMotif-         Unknown                       [No motifs found]
    OMSVM-            Unknown                       [No details]
    PPSVM-            Unknown                       [No details]
    Profile-          Unknown                       [No matches to profiles found]
    SCL-BLAST-        Cytoplasmic                   [matched 15597667: conserved hypothetical protein[Pseudomonas aeruginosa PAO1]]
    SCL-BLASTe-       Unknown                       [No matches against database]
    Signal-           Unknown                       [No signal peptide detected]
  Localization Scores:
    Cytoplasmic            9.26
    Periplasmic            0.48
    CytoplasmicMembrane    0.24
    OuterMembrane          0.01
    Extracellular          0.01
  Final Prediction:
    Cytoplasmic            9.26

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Other sequence analysis tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in the ENIGMA genome browser

Input

>SMc04240
MQTALTPPPLILLPISGSSVGFPVRRVYCVGRNYAAHAREMGHDPDREAPFFFQKNADNL
LPPGENFPYPTRSSDVHHEVELVVAMRTGGADIPVSEAADHIFGYGVGIDFTRRDLQAEA
KKAGKPWTAAKAFEHSAPVSAIVPVTAIGHPASGNIWLKVNGELRQQGDLDQMIWKVPEI
IAELSRLFTLAPGDIIMTGTPSGVGPVTQGDVVACGIDGIGAISVNIV

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory